Sabyasachi Mohanty
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Resources

Skills, Service, Teaching & Memberships

Expertise

Technical Skills

code

Programming Languages

PythonRMATLABJavaBash/ShellSQLSAS
psychology

Machine Learning & AI

Scikit-learnPyTorchTensorFlowKerasXGBoostLightGBMDeep learningAutoMLClusteringRegressionGraph neural networks (GNNs)Graph attention networks (GATs)Siamese networksLSTM models
biotech

Bioinformatics & Computational Biology

COBRApyCOBRA ToolboxBiopythonRDKitDESeq2edgeRSeuratScanpyCytoscapeATAC-seq and RNA-seq analysisGSEADAVIDEnrichrKEGG Mapper
calculate

Optimization & Modeling

GurobiMATLAB SimBiologyGenome-scale metabolic modelingPharmacometric modelingDigital-twin modelingMetabolic-network analysis
science

Materials & Polymer Informatics

MatminerPymatgenMolecular / composition descriptorsPolymer sequence modelingCopolymer reactivity-ratio predictionSolid-state electrolyte property predictionGraph neural networks for chemical and materials systems
memory

Data Engineering & HPC

PySparkHadoopHiveAirflowDockerMavenJenkinsGitSLURMLinux HPC environmentsVirtualizationBashVPNAWSPhysical Server setup and management
bar_chart

Data Science & Visualization

PandasNumPySciPyMatplotlibSeabornPlotlyTableauStreamlit
storage

Databases & APIs

PostgreSQLMongoDBBioMartNCBI
water_drop

Wet Lab & Experimental Skills

Protein purificationMetabolomicsNanoDropFlow cytometryOpentrons programming

Service

Academic Service

record_voice_overSession Chairs & Facilitation (2025)

Section Chair, NAS Meeting, Biology and Biological & Biomedical Sciences Section

2025

Session Facilitator, Nebraska Academy of Sciences Meeting

2025

Session Chair, Drug and Gene Delivery IV: Computational Approaches, AIChE Annual Meeting

2025

Session Chair, Biomolecular Engineering and Drug and Gene Delivery Sessions, AIChE Annual Meeting

2025

edit_documentEditorial Roles

Editor, Frontiers in Physiology, Section: Skeletal Physiology

2025

rate_reviewReviewer for Journals

Frontiers in NutritionFrontiers in MedicineFrontiers in OncologyFrontiers in Cellular and Infection MicrobiologyFrontiers in EndocrinologyFrontiers in Molecular NeuroscienceFrontiers in Clinical Diabetes and HealthcareFrontiers in ImmunologyAnnals of the New York Academy of SciencesJournal of Animal ScienceElsevier Plant Physiology and BiochemistryOxford University Press journalsTaylor & Francis journalsBMC Veterinary ResearchJournal of EndocrinologyPLOS ONEJournal of Visualized Experiments (JoVE)International Journal of Tropical Disease & Health (IJTDH)SpringerSpringer Nature for CancerSpringer Nature for MicrobiologyWiley journals

fact_checkGrant Reviewer

Evaluator, Undergraduate Creative Activities & Research Experiences (UCARE) Grant Applications
2024–2026

University of Nebraska-Lincoln

Reviewed and scored student-led research proposals for scientific merit, experimental design, and reproducibility.

gavelJudge

Nebraska Junior Academy of Sciences Judge: Evaluated student research projects in biological and computational sciences

2026

Nebraska Junior Academy of Sciences Judge: Evaluated student research projects in biological and computational sciences

2025

Nebraska Junior Academy of Sciences Judge: Evaluated student research projects in biological and computational sciences

2024

Education

Teaching

University Teaching

Graduate Teaching Assistant, BIOC 431: Biochemistry of Metabolism

University of Nebraska-Lincoln

2023–2024

Assisted with problem-set development, grading, metabolic-flux instruction, enzyme-kinetics concepts, and computational interpretation of biological data.

Outreach Teaching

Club Facilitator, Python programming

Girls Code Lincoln

2023–Present

Affiliations

Memberships & Societies

American Institute of Chemical Engineers (AIChE)

2024–Present

Society for Biological Engineering (SBE)

2024–Present

National Strategic Research Institute (NSRI) Medical Countermeasure Drug Discovery and Development Program

Featured in NSRI student researcher profile/news

2022–2024

Biochemistry Graduate Student Association (BCGSA), University of Nebraska-Lincoln

2022–2024

Phi Gamma Phi Honor Society, Inducted Member

2023

Talks

Invited Talks & Seminars

Plenary Speaker, Bangkok, Thailand

Photonics2026

2026

Plenary Speaker, Mugla, Turkey

GENARA2026

2026

Invited Speaker, Mugla, Turkey

11th International Congress on Biomaterials and Biosensors (NextRegen2026)

2026

Invited Speaker

18th Midwest AIChE Conference, Biomedical Engineering & Pharmaceuticals Session

2026

Invited Talk, UNL

MMOD Symposium, University of Nebraska-Lincoln: 'Building Digital Twins for rapid drug discovery'

2026

Invited Talk, Omaha, NE

AI in Health Conference, University of Nebraska Medical Center (UNMC): 'Polyform: Polymer Digital Twin, engineering a polymeric drug for pancreatic cancer treatment'

2026

Invited Talk, UNL

Department of Biochemistry, University of Nebraska-Lincoln, Annual Departmental Research Talk, 'Integration of machine learning and first-principles models'

2026

Invited Speaker, Mugla, Turkey

International Congress on Digitalization, Artificial Intelligence, and Society (DIGIAI SOCIETY 2025)

2025

Invited Talk, UNL

Department of Biochemistry, University of Nebraska-Lincoln, Annual Departmental Research Talk, 'Data-driven drug repurposing for immune-system-related diseases'

2024

Invited Talk, UNL

Biomedical Engineering Graduate Seminar Series, University of Nebraska-Lincoln: 'Application of LLM in Bioengineering'

2024

Invited Talk, UNL

Department of Biochemistry, University of Nebraska-Lincoln, Annual Departmental Research Talk, 'Machine learning enables prediction of metabolic-system evolution in bacteria'

2023

Presentations

Conference Presentations

FOCAPO-CPC 2027: 'CopolPred: Machine Learning Enabled Prediction of Copolymer Reactivity Ratios'

2027

FOCAPO-CPC 2027: 'Molytics: A Clustering-Driven Machine Learning Framework for Materials Discovery and Model-Guided Experimental Design'

2027

AIChE Annual Meeting: 'Sequence-Programmed Active Drug Engineering (SPADE Twin): An AI Digital Twin for Reaction-Centric Drug Design'

Minneapolis, MN

2026

AIChE Annual Meeting: 'Multiscale AI Framework for Precision Medicine'

Minneapolis, MN

2026

AIChE Annual Meeting: 'Hybrid Deep Learning Framework for Prediction of Copolymer Reactivity Ratios'

Minneapolis, MN

2026

AIChE Annual Meeting: 'AI-Driven Platform for Prediction and Inverse Design In Chemistry and Materials Science'

Minneapolis, MN

2026

AIChE Annual Meeting: 'From Monomer Chemistry to Graph-Based Learning: Evaluating the Role of Chemical Knowledge and Model Architecture In Polymer Kinetics Prediction'

Minneapolis, MN

2026

UNL Biochemistry Seminar Presentation: 'Leveraging Digital Twin for reaction engineering'

UNL

2026

Husker AI Days Oral Presentation: 'Polymeric Drugs Digital Twin'

University of Nebraska-Lincoln

2026

AIChE Midwest Regional Conference Presentation: 'PolyForm: Polymeric Drugs Digital Twin', Biomedical Engineering & Pharmaceuticals Session, 18th Midwest AIChE Conference

2026

MMOD Symposium, University of Nebraska-Lincoln: Presentation

University of Nebraska-Lincoln

2026

UNL Biochemistry Seminar Presentation: 'Bacillus subtilis Genome-Scale Modeling'

UNL

2025

MICRA Presentation: 'Community-Based Modeling for Improvement of Drought-Resistant Plant Growth'

2025

UNL Biochemistry Seminar Presentation: 'Data-driven drug repurposing for immune-system-related diseases'

UNL

2024

AIChE Presentation: 'Optimization-Based Framework for Automated Genome-Scale Model Reconstruction upon Resolving Thermodynamically Infeasible Cycles'

San Diego, CA

2024

MICRA Presentation: 'Community in a Spoon: Modeling for Improvement of Drought-Resistant Plant Growth'

2024

UNL Biochemistry Seminar Presentation: 'Machine learning enables prediction of metabolic-system evolution in bacteria'

UNL

2023

UNL Biochemistry Seminar Presentation: 'Machine Learning in Mircobial Research'

UNL

2022

IEMIS Presentation: 'Systems Biology Paradigm for Exploring the Relation Between Obesity and Ovarian Cancer with a Focus on Their Genome-Scale Metabolic Models'

2022

ICDAM Presentation: 'Heuristic Approach Towards COVID-19: Big Data Analytics and Classification with Natural Language Processing'

2021

ICICC Presentation: 'Medical Data Analysis Using Machine Learning with KNN'

2020

Posters

Poster Presentations

AIChE Annual Meeting: 'Understanding Sequential Relevance for Polymer Development Using Deep Learning'

Minneapolis, MN

2026

Invited Highlight UNL College of Engineering Poster Presentation: 'PolyForm: Polymer Digital Twin'

University of Nebraska-Lincoln

2026

MMOD Symposium: 'PolyForm: Polymer Digital Twin'

University of Nebraska-Lincoln

2026

AI in Health Conference 2026 Shaping the Future of Care: 'PolyForm: Polymer Digital Twin'

University of Nebraska Medical Center, Omaha, NE

2026

Husker AI Days: 'Polymeric Drugs Digital Twin'

University of Nebraska-Lincoln

2026

UNL Research Days: 'PolyForm: Drug Discovery'

UNL

2026

UNL Research Days: 'Soil Microbial Community Transactions'

UNL

2025

UNL Microbiology Symposium: 'Community in a Spoon: Modeling for Improvement of Drought-Resistant Plant Growth'

UNL

2024

COBRA, AIChE Annual Meeting: 'Optimization-Based Framework for Automated Genome-Scale Model Reconstruction upon Resolving Thermodynamically Infeasible Cycles'

San Diego, CA

2024

Credentials

Certifications

verified

International Teaching Assistant Certification

University of Nebraska-Lincoln

2023
verified

CITI Certification, Collaborative Institutional Training Initiative

Completed for U.S. Department of Defense-funded research

2022